rs260488927 SNP Detail

Summary

• ID
  rs260488927
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142131843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTGGCT CCCCATTCCT
  CTCCAACCCT AGCTCAGGCC CTTCAGCTTC ACTCCGATGT TTTCCAGCCT TTGCGATGCC
  TTTGCTCTGC CTGAGCTAGC CCCTCAGTCC TTCAACATTC CTGCCAGACT CCAGATGCCG
  AGGTGCTCCT CGGACCCCAC GACTCTCCTC CAGCTCTCCC ATCTTCCCCA GTTTCCCCGA
  T
  ACCCCCCACC CCCACCCCCC ACCCCCCTCC CACACCCGGT GCTTCGGGCC CTCTAGCCCG
  GGCTTTTTCT AACTGGAGTG GCTCCGCCCA GAATTCCCGC CCCTACTCTG TCAACCAATC
  AGTACATGGC CCCGCCGGGG CCCCCGCAGG GCCCACCTCC ACCCTGTATC GTTCCAGCGC
  ACGTTCGCCT CACCCCACAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss373453179	MGP_WTSI_7_149764011	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs260488927					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453179	MGP_WTSI_7_149764011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142131843 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	1183 bp downstream
Gm56421	predicted gene, 56421	188 bp downstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	959 bp upstream
Rr658231	regulatory region 658231	29 bp proximal
Rr658232	regulatory region 658232	1153 bp proximal
Rr658233	regulatory region 658233	1764 bp proximal
Tssr2460	transcription start site region 2460	846 bp downstream
Tssr2461	transcription start site region 2461	180 bp downstream
Tssr70214	transcription start site region 70214	1453 bp downstream
Tssr70215	transcription start site region 70215	1130 bp downstream
Tssr70216	transcription start site region 70216	1066 bp downstream
Tssr70217	transcription start site region 70217	1049 bp downstream
Tssr70218	transcription start site region 70218	699 bp downstream
Tssr70219	transcription start site region 70219	661 bp downstream
Tssr70220	transcription start site region 70220	549 bp downstream
Tssr70221	transcription start site region 70221	510 bp downstream
Tssr70222	transcription start site region 70222	452 bp downstream
Tssr70223	transcription start site region 70223	310 bp downstream
Tssr70224	transcription start site region 70224	265 bp downstream
Tssr70225	transcription start site region 70225	227 bp downstream
Tssr70226	transcription start site region 70226	132 bp downstream
Tssr70227	transcription start site region 70227	50 bp downstream
Tssr70228	transcription start site region 70228	37 bp downstream
Tssr75819	transcription start site region 75819	1843 bp upstream
Tssr75820	transcription start site region 75820	1792 bp upstream
Tssr75821	transcription start site region 75821	1779 bp upstream
Tssr75822	transcription start site region 75822	1618 bp upstream
Tssr75823	transcription start site region 75823	1575 bp upstream
Tssr75824	transcription start site region 75824	1542 bp upstream
Tssr75825	transcription start site region 75825	1418 bp upstream
Tssr75826	transcription start site region 75826	1370 bp upstream
Tssr75827	transcription start site region 75827	1350 bp upstream
Tssr75828	transcription start site region 75828	1218 bp upstream
Tssr75829	transcription start site region 75829	728 bp upstream
Tssr75830	transcription start site region 75830	701 bp upstream
Tssr75831	transcription start site region 75831	680 bp upstream
Tssr75832	transcription start site region 75832	614 bp upstream
Tssr75833	transcription start site region 75833	537 bp upstream
Tssr75834	transcription start site region 75834	263 bp upstream
Tssr75835	transcription start site region 75835	231 bp upstream
Tssr75836	transcription start site region 75836	209 bp upstream
Tssr75837	transcription start site region 75837	186 bp upstream
Tssr75838	transcription start site region 75838	116 bp upstream
Tssr75839	transcription start site region 75839	94 bp upstream
Tssr75840	transcription start site region 75840	65 bp upstream
Tssr75841	transcription start site region 75841	38 bp upstream
Tssr75842	transcription start site region 75842	21 bp upstream
Tssr75843	transcription start site region 75843	15 bp upstream
Tssr75844	transcription start site region 75844	within coordinates
Tssr75845	transcription start site region 75845	33 bp downstream