rs260490573 SNP Detail

Summary

• ID
  rs260490573
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70315883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGAGACA TGGGCTGGTT
  TTCCGCCGCT CTCCACTCTC CTTAGCTGGG TTTAGGCTTT TCCCCTCCAG CCCGAGCAGA
  AAGCTCCTTC AGGCCGGGAG GAGACTGGGG CCGGGAGAGG CTCCCTTTAC GGGCGGCACC
  CTTCTGCGCT CCGAGGACAA AAGCGTCGAA GCTCTTTGGG TCGGCCACCC GGGCTCAGCG
  M
  GCGTAGGGGG ACCTCGCTTG GGGCATGAAG GCGCGGCGTC TTGGAGTAGA CAGGGCCGGG
  GGAAGAGGCC GAGTTGTGTG TGCTGGAGAG CGAGAGCCGG GCGCGCTCCG GGTCTGAAAC
  TACCTGTAGC TGCAGCTACC TGTCCGCCCC ACCTCGGGAA GAACAACAAT GCTCTCTTGC
  GCGCGTGCGT GTCTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391459049	MGP_WTSI_14_70478241	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260490573					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391459049	MGP_WTSI_14_70478241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70315883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6681	CpG island 6681	within coordinates
Egr3	early growth response 3	within coordinates
Rr404186	regulatory region 404186	1393 bp downstream
Rr494836	regulatory region 494836	1110 bp distal
Tssr126387	transcription start site region 126387	1511 bp downstream
Tssr126388	transcription start site region 126388	1499 bp downstream
Tssr126389	transcription start site region 126389	1244 bp downstream
Tssr126390	transcription start site region 126390	1212 bp downstream
Tssr126391	transcription start site region 126391	1068 bp downstream
Tssr126392	transcription start site region 126392	1050 bp downstream
Tssr126393	transcription start site region 126393	389 bp downstream
Tssr126394	transcription start site region 126394	807 bp upstream
Tssr126395	transcription start site region 126395	961 bp upstream
Tssr126396	transcription start site region 126396	1714 bp upstream