rs260497137 SNP Detail

Summary

• ID
  rs260497137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51446754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGCCGGA CCACGGAGGC
  GGGTGGCCGG TTTCCATTGC GGTGCCTACG GCCTCGCCAT GCCATTTTTA ATAACTCATT
  GATTTCAAAC CCGTTACCTC CATCGCGGAC TCAGTCGCTT CAGCCCGATT TCCCGCAGCC
  GAGCGAGATG AGAAAGACCT CCGCGGACGG ACGCGCACGG GACTCGTCCT GGCGCTGTGG
  R
  GAGAGCAGGC GATGGCCAAG AAACTGGGCC GCAAAGGAGC TCCTGCACAC GGGACCGGCG
  CCGCTGCTAC TGCCGCTGGA GCCGAGACCG CCGCTTTTCT AGAACCTTCC CCCCACTAAC
  GCGTCTCCGC TTACGTCACG CCGTTACGTA AACGCCCTAA CCGCCGCCAA TGGCGGGAAG
  GGCCTACACT CTCCTTACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292349	MGP_WTSI_6_51419773	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260497137					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292349	MGP_WTSI_6_51419773	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51446754 () rs orientation: forward

Symbol	Name	Function Class
Cbx3	chromobox 3	842 bp upstream
Cpgi17402	CpG island 17402	within coordinates
Gm67572	predicted gene, 67572	within coordinates
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	within coordinates
Rr630212	regulatory region 630212	1777 bp distal
Rr630213	regulatory region 630213	334 bp distal
Rr630214	regulatory region 630214	within coordinates
Rr630215	regulatory region 630215	932 bp proximal
Tssr56443	transcription start site region 56443	312 bp downstream
Tssr56444	transcription start site region 56444	409 bp upstream
Tssr56445	transcription start site region 56445	565 bp upstream
Tssr56446	transcription start site region 56446	631 bp upstream
Tssr56447	transcription start site region 56447	647 bp upstream
Tssr56448	transcription start site region 56448	659 bp upstream
Tssr56449	transcription start site region 56449	720 bp upstream
Tssr56450	transcription start site region 56450	736 bp upstream
Tssr56451	transcription start site region 56451	773 bp upstream
Tssr56452	transcription start site region 56452	834 bp upstream
Tssr56453	transcription start site region 56453	859 bp upstream
Tssr60945	transcription start site region 60945	1953 bp upstream
Tssr60946	transcription start site region 60946	1305 bp upstream
Tssr60947	transcription start site region 60947	62 bp downstream
Tssr60948	transcription start site region 60948	95 bp downstream
Tssr60949	transcription start site region 60949	1255 bp downstream