rs260497600 SNP Detail

Summary

• ID
  rs260497600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152552433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agagCGCTC TGTTCCCTCC AGTCTACACC
  ATACTAATGG GGACCCTCTC TCTCCATGTA TGGGATGGAT CTGTAGATTG TACCAGCCAT
  ACGACTTTAT TATATTAGTT GCTTTCAGCT CCATTTCTAC CTTCAAGCCC TGTAAGCATC
  Y
  TGCGACTACA GACGTGTCCT ATTCAGAGCA AGCATAAGTG AATGTTAAAT GAATGTCAAT
  TCATTATTGA CATTtgttgc agacagccct ggggctgatt atgtttgatg ttaattctgt
  tctcctgtga ggggctgcga acaaggaatg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320067359	CHEV_1_154523812	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260497600					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152552433 () rs orientation: forward

Symbol	Name	Function Class
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	Intron
Rr420515	regulatory region 420515	1181 bp distal
Rr420516	regulatory region 420516	854 bp proximal
Rr420517	regulatory region 420517	1957 bp proximal