rs260502477 SNP Detail

Summary

• ID
  rs260502477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76130363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTTAA GTGACAAGAG
  TATGGAGAGA ATGGGACAAT TAAACGATTA AGTCTCTTGA TCTGGACTAG GTGTGGATAA
  AATGAATGTT GTGGCTTTTG TTGTTGTTTG TCAGGACAGG GTCTCACTAT GCAGTGCTGG
  CTTGGCTGTC CTGGAACTCG CTCTGTAGAT CAGGCTGGCC TCAAACTCAA GAGATCCACC
  Y
  GCCTCTGCCT CAAGGCATGT GCCACTACCA CCCAGCTGTG AATGCTGTGT CTTAAAGCAA
  GCAAGTGTCT GGGTGTCGTG GTTCGTGTTG TAAGTGTAGT TGGAAAGCTA AGGCAGGAGG
  ACTGCCCCAT GTCTGAGGTA AGCCTGTGTT GCATAGTGAG TTCCAAGCCA GCTGTGGTTA
  CTGACTGAGA CCTTGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611493	MGP_WTSI_15_76076593	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260502477					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611493	MGP_WTSI_15_76076593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76130363 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7222	CpG island 7222	323 bp proximal
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	601 bp upstream
Rr504688	regulatory region 504688	122 bp proximal
Rr504689	regulatory region 504689	1531 bp proximal
Tssr4637	transcription start site region 4637	414 bp downstream
Tssr131720	transcription start site region 131720	584 bp upstream
Tssr131721	transcription start site region 131721	653 bp upstream
Tssr131722	transcription start site region 131722	675 bp upstream
Tssr131723	transcription start site region 131723	849 bp upstream
Tssr131724	transcription start site region 131724	1208 bp upstream
Tssr131725	transcription start site region 131725	1363 bp upstream
Tssr131726	transcription start site region 131726	1435 bp upstream
Tssr131727	transcription start site region 131727	1501 bp upstream
Tssr131728	transcription start site region 131728	1521 bp upstream
Tssr131729	transcription start site region 131729	1660 bp upstream
Tssr131730	transcription start site region 131730	1681 bp upstream
Tssr131731	transcription start site region 131731	1744 bp upstream
Tssr131732	transcription start site region 131732	1769 bp upstream
Tssr131733	transcription start site region 131733	1814 bp upstream
Tssr131734	transcription start site region 131734	1831 bp upstream
Tssr131735	transcription start site region 131735	1898 bp upstream
Tssr131736	transcription start site region 131736	1942 bp upstream
Tssr134959	transcription start site region 134959	446 bp downstream
Tssr134960	transcription start site region 134960	1449 bp downstream
Tssr134961	transcription start site region 134961	1851 bp downstream
Tssr134962	transcription start site region 134962	1981 bp downstream