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rs260507134 SNP Detail
Summary
  • ID
    rs260507134
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr16:22712425 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCGTGAGCG AGCACTGTGC
ATGTGCTACG TGCTGATTGT GAGATGCTCA TTATGGGATG CCCGAGTGGA TCAAGAAGTC
CCTGCACATA AACCCAGTGC ATCTACCCAT GGTAGTTCTG AGGTCTCCGG AGAGTGAAAA
TGCCCAGTGA ACTAAATTGG GTTGAGAGTT TTCAAACTTT GGGGCATTTC AAGGTGTGAA
M
GGGGAATACA TAGACAGGTG AAACACTGAA CTCCTCACAG GGTCCTGCAA GCTTCCCAAA
ATGCTTCCAT CCTAGTGGTG ACAGTTTCCC AGCCTCAGAA TAGAAAGGCG GCAAACAGGA
GATAGGACTC TCTGTGCATC CAGGACCCAG GAAGGTAGAA GATAAAGAGC CAAGGGAGGA
GCAAGAGAAA CCTTTAAGGA                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395628322 MGP_WTSI_16_22893748 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260507134 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395628322 MGP_WTSI_16_22893748 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:22712425 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ahsg alpha-2-HS-glycoprotein within coordinates
Gm30505 predicted gene, 30505 within coordinates
Rr513335 regulatory region 513335 1626 bp distal
Rr513336 regulatory region 513336 307 bp proximal
Rr513337 regulatory region 513337 656 bp proximal
Tssr4818 transcription start site region 4818 851 bp downstream
Tssr4819 transcription start site region 4819 1656 bp upstream
Tssr137557 transcription start site region 137557 1624 bp downstream
Tssr137558 transcription start site region 137558 1094 bp downstream
Tssr137559 transcription start site region 137559 898 bp downstream
Tssr137560 transcription start site region 137560 855 bp downstream
Tssr137561 transcription start site region 137561 830 bp downstream
Tssr137562 transcription start site region 137562 504 bp downstream
Tssr137563 transcription start site region 137563 554 bp upstream
Tssr137564 transcription start site region 137564 573 bp upstream
Tssr137565 transcription start site region 137565 638 bp upstream
Tssr137566 transcription start site region 137566 737 bp upstream
Tssr137567 transcription start site region 137567 1102 bp upstream
Tssr137568 transcription start site region 137568 1121 bp upstream
Tssr137569 transcription start site region 137569 1152 bp upstream
Tssr137570 transcription start site region 137570 1167 bp upstream
Tssr137571 transcription start site region 137571 1501 bp upstream
Tssr137572 transcription start site region 137572 1524 bp upstream
Tssr137573 transcription start site region 137573 1618 bp upstream
Tssr137574 transcription start site region 137574 1639 bp upstream
Tssr137575 transcription start site region 137575 1645 bp upstream
Tssr140501 transcription start site region 140501 1526 bp upstream
Tssr140502 transcription start site region 140502 1380 bp upstream
Tssr140503 transcription start site region 140503 1342 bp upstream
Tssr140504 transcription start site region 140504 675 bp downstream
Tssr140505 transcription start site region 140505 748 bp downstream
Tssr140506 transcription start site region 140506 1155 bp downstream
Tssr140507 transcription start site region 140507 1538 bp downstream
Tssr140508 transcription start site region 140508 1582 bp downstream
Tssr140509 transcription start site region 140509 1601 bp downstream
Tssr140510 transcription start site region 140510 1616 bp downstream
Tssr140511 transcription start site region 140511 1659 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory