rs260508453 SNP Detail

Summary

• ID
  rs260508453
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45949282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCATCCGA GACCTTTTGT CGTTCTCTTC
  TATCCTGTAC AGCTCCTTTT GTTTAAGAGT CTAGATCCAT CAGTCTCTGT AGAGGACTAT
  GTCTCACTTG TTCCCTCATG AACATTAAGC ACCTAGCGTA GTAGCATAGG GTTAAGAACT
  M
  AGGATGTTTT GGGTAAATAA TGTAAATGTA TCTATCTCTT CTGATTTGTA CCAGTGTAAA
  CAAAACCAAT AAGACTTTTT TTAAGGATAC ATTTTGATTG CAAATATATC ATATTTTTGA
  AAAGGAATTT AATCAGTGGT AATCCAACAC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323657879	CHEV_11_45871957	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260508453					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45949282 () rs orientation: forward

Symbol	Name	Function Class
Adam19	ADAM metallopeptidase domain 19	within coordinates
Cpgi2772	CpG island 2772	1828 bp distal
Cpgi2773	CpG island 2773	1154 bp distal
Gm72342	predicted gene, 72342	130 bp upstream
Rr445870	regulatory region 445870	802 bp distal
Rr445871	regulatory region 445871	283 bp distal
Rr445872	regulatory region 445872	40 bp distal
Rr445873	regulatory region 445873	1664 bp proximal
Tssr107582	transcription start site region 107582	323 bp upstream
Tssr107583	transcription start site region 107583	260 bp upstream