rs260514474 SNP Detail

Summary

• ID
  rs260514474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:93612460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGGGAT GGAGGAGAGT
  GGATGAACTG CCTGCTTCCT GGCATGAACA CCTCCTAACT CTAGCATTGG GAAGAGGGAG
  CAGGGATAGG CAGACCCCTG TGGCTCTTCA GCCAGAGAGT CTAGACGGCC AGTGAGCTCT
  GGGTTCAGGA AGAGACTGTG TCTCAAAAAC AAATGAAGTG GAAAACAGTA GAGGAAGACA
  W
  CCCAAATTTG ACCTCTGGTC TCCACATACA TGTGCACATA TGAGCACATA CACCCACATG
  ACTTGTGCAT ACACACACAC ACACACACAC ACACACACAC GAACTGAAAG GACAGTAAAA
  ATTAGGTGTC AAAGTCAGGT AGAGAGTAAA GTCAAGTTCA AAATGAAAAA CCAATAAAAC
  AAAAAGAAAG AAAGAACAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322805312	CHEV_8_95409731	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260514474					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:93612460 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lpcat2	lysophosphatidylcholine acyltransferase 2			Intron
				Noncoding-Transcript-Variant
Tssr78766	transcription start site region 78766			33 bp upstream
Tssr78767	transcription start site region 78767			1568 bp upstream
Tssr78768	transcription start site region 78768			1617 bp upstream