rs260516487 SNP Detail

Summary

• ID
  rs260516487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115832978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAGATC AAAGCTACAG
  TGAGATATCC TCTCACTCCT GTTAAAATAG TGAGTGACTT GTAATAGCAA ACACACACAC
  ACACACACAC ACACACACAC ACACACCCAA ACAAAATAAA TGTTAATAAG GAGGAGGCAA
  GAATACTTTA ATCTTAGTAC TTTAGTGGTA ATCTAATTAA TATGGCCATT GTGAAATATA
  Y
  TAAAGCTTCC CTCAAACGAG CTAGAAATAG AGCTGCCACC AGGCATTCTT CTCCTGTCAT
  TGCATGGGTA ACTAAAGGAA TGAAATCAGT GTATTGAAGA GGTGTAGCTG GTCTGTGCTA
  CTTTGTAGGC TCCTTTTTCT TCTACCCTTC GCCACCCTTT ATCCACCCCT TCAACTCCCT
  AACACTAGAC AGGAGAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320894096	CHEV_3_115742247	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260516487					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115832978 () rs orientation: forward

Symbol	Name	Function Class
Rr583646	regulatory region 583646	1635 bp proximal