rs260519402 SNP Detail

Summary

• ID
  rs260519402
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40517056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTAATA AGACAAGTGG
  CCTTCAGCCT TGTGCTAAGA TTTGCTCAGC CATACCTTTC ATGAGGTAAC TCTTTACACC
  TTTAAAAAGA TGTTCTGATG GAGTAATCAT CAACACTGAG TAGAGTGCCT TTTGTACATG
  GAGCCTCCTG CCATCCTTCA CTGTGCTCAA TCAGCCCAGG CTCTGTGCTG ATCCCAGACC
  S
  TCTTAGAGCA TCATCTGGTG ATGCTCACAC GGATGCTAGT CAACCAAAGA AAGAGGACAC
  AATTTCAGGT CAGAGTGGAC AAGTTCATAG CCTCCTTGGG GAAACTGGCA GTATCTAGGG
  AATCCATGGC AACTTCACAG GAGTTTATTA GTAAATAATG ATACATAAAG TAGCTGATTC
  CACACAACCC CATCCCTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393745570	MGP_WTSI_15_40485206	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260519402					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393745570	MGP_WTSI_15_40485206	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40517056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	710 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	489 bp proximal
Rr501589	regulatory region 501589	1386 bp proximal
Rr501590	regulatory region 501590	1949 bp proximal
Tssr4586	transcription start site region 4586	1635 bp upstream
Tssr131170	transcription start site region 131170	1221 bp upstream
Tssr131171	transcription start site region 131171	1252 bp upstream
Tssr131172	transcription start site region 131172	1334 bp upstream
Tssr131173	transcription start site region 131173	1360 bp upstream
Tssr131174	transcription start site region 131174	1409 bp upstream
Tssr131175	transcription start site region 131175	1548 bp upstream
Tssr131176	transcription start site region 131176	1599 bp upstream
Tssr131177	transcription start site region 131177	1648 bp upstream
Tssr131178	transcription start site region 131178	1677 bp upstream
Zfpm2	zinc finger protein, multitype 2	1382 bp upstream