rs260520792 SNP Detail

Summary

• ID
  rs260520792
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103251747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCACAT AAATACAAGC
  GTGCATACAC ACACAGGAAG GAAAATTAGA CGAGATCATG TATGTGAGCC ACTTAGTGCC
  CTTCACCCTG CCCTTGCATT GGCACACAAT AGCAACACAA AACCCCAAAG CAGGTGATTA
  AAGGCACTTG TCACTAAGCC CAATAACCTG AATTTGATTA TTTTTCTCTT TTCTCTTTCT
  K
  CCCCCCCCCC CCCCCCCCCC CGTCTTTTGA GACAGGGTTT CTCTATGTAG CCCTGGCTGT
  CCTGGAACTT GCTGTATAAC TTGGCTGGCC TTAAACTCAG AGATTCAACT GCCTCTGCCT
  GCCTCCTTAG TACTGGGGTT AAAGGTGTGT GCCACCCCCT CTGCCTGTCA TGAATTCACT
  CAGTGGAAGA AAACTAAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325087096	CHEV_15_103173751	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260520792					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103251747 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	966 bp downstream
Rr404654	regulatory region 404654	551 bp downstream
Rr510619	regulatory region 510619	1236 bp distal
Rr510620	regulatory region 510620	286 bp distal
Rr510621	regulatory region 510621	698 bp distal
Rr510622	regulatory region 510622	268 bp proximal
Tssr136772	transcription start site region 136772	1238 bp downstream
Tssr136773	transcription start site region 136773	1318 bp downstream
Tssr136774	transcription start site region 136774	1392 bp downstream
Tssr136775	transcription start site region 136775	1410 bp downstream
Tssr136776	transcription start site region 136776	1454 bp downstream
Tssr136777	transcription start site region 136777	1486 bp downstream