rs260525678 SNP Detail

Summary

• ID
  rs260525678
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148990243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGCGGC AGAGGCAGCA
  GCTGCTACGG GAAAGCGGAG CTCTATGGTG TCTCTGTGCC TGCGCCTGCC CCGAGCCAGC
  CCCACGCCCG AGCCGCGGCG CGCGCGGCCA GGGCCCGGCT CCGCCGCAGC CACGGCTGCG
  TCCCCAGGCC CGGGCGCCTC CCCGCAGGCC CGCCCCCCCT CCCGCTCCAC GCTCCCGCCC
  S
  GAGCCGTTGG GATGTGCGGC CCGTGCTTGG GGATGCCTCC CCGAGTGGGG TGACTGCTCG
  GGGGGGCCTG TGGCCCAAAC ACGGGGGCCT CTGCGGGCTC CGGGACGGCC GTGCTGCTGC
  AGCCCACCAC AAGACACCCC TCCCCGGGAC TGCCCGCCTA ACGTGCCCAC CCTGCCCAGA
  AGCCTAGTCT GCACCCGCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367145531	MGP_WTSI_5_149865009	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260525678					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367145531	MGP_WTSI_5_149865009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148990243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	within coordinates
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	426 bp proximal
Hmgb1	high mobility group box 1	376 bp upstream
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	1417 bp downstream
Rr399531	regulatory region 399531	122 bp downstream
Tssr1757	transcription start site region 1757	203 bp downstream
Tssr49872	transcription start site region 49872	224 bp downstream
Tssr54616	transcription start site region 54616	1978 bp upstream
Tssr54617	transcription start site region 54617	1809 bp upstream
Tssr54618	transcription start site region 54618	1725 bp upstream
Tssr54619	transcription start site region 54619	1454 bp upstream
Tssr54620	transcription start site region 54620	380 bp upstream
Tssr54621	transcription start site region 54621	362 bp upstream