rs260525948 SNP Detail

Summary

• ID
  rs260525948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75311850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGGGAAA CCTCTGTGAT
  TTACGCCAGA GCCTCAGGTC CACTATAGTG GTGAAATAAC CGATGGTTAT TCGACGTTTT
  GTTATCAACC TGGTCACCTT GTCCATTTTA ATTTTGATGT GTGAGATGGA GGTGGTGGTG
  GTGGTGGTGG TGGTGGTGGT GGTGGTGGTG GTGGTGGTGG AGATAGAGGA CTTCTCACAC
  M
  CCCCCCCCCA CACACACACA CCAAAAGCAT TCAAAAATAG AGCGCAAGTC GAAGGCCCTC
  CCTTCCCCCA CCCGCTCCGG GAAGTCCCGC TTCGCCCAGG TTTGGTTCCT GGAGTGTCAG
  CGCCCCCTTT CCCTCGCCAG CAGGATCGCC GTGTCCCAAC TGTCTCTCGC TGGGTGTCTT
  GGGTTCCCTG GTTTGTGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss365485961	MGP_WTSI_5_75547214	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	A	A	C	C	A	C	C	C	C	C	C	C	A	C	C	A	C	A	C	A	A	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs260525948					SNP	C	C	C	C	C	A	A	C	C	A	C	C	C	C	C	C	C	A	C	C	A	C	A	C	A	A	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365485961	MGP_WTSI_5_75547214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75311850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15981	CpG island 15981	32 bp proximal
Cpgi15982	CpG island 15982	1612 bp proximal
Gm42802	predicted gene 42802	1866 bp downstream
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	1103 bp upstream
Rr125352	regulatory region 125352	within coordinates
Tssr46684	transcription start site region 46684	191 bp upstream
Tssr46685	transcription start site region 46685	970 bp upstream
Tssr46686	transcription start site region 46686	1085 bp upstream
Tssr46687	transcription start site region 46687	1127 bp upstream