rs260537623 SNP Detail

Summary

• ID
  rs260537623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58156348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTCAGC GGTCTTGAAC
  TCTCTTTGTG GCCTAGGCTG GCCTGGAACT TGTCATCCTC CCTCCAGCCC TACCATCCCA
  AGCACTATTG CTCCTGGGAT GTGCAACCAC AGCTGAAAAA CGGGAAGTGT TGGTGTGGGG
  GTCAGGGAGG GCGACTATAG TTTTGCCAAG TCTGGGACAT GCCTTTAGCT CCAGGCCAGA
  R
  CAAATAAGAC TCCTGGCCAG GCCTTCCACA GGACTATAGT CTTTCATCTG AGGTAGGCGC
  TTCAGGCAAG GCTTCAGGGA GTAGGAGTTA CAATCCAACT ATCCCCAGTT ACAATCCAAC
  TCATCCCGGT TTTTTTTTTT TTTTTTTTAG ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC
  CTGGAACTCA CTCTGTAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377704980	MGP_WTSI_9_58096872	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260537623					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377704980	MGP_WTSI_9_58096872	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58156348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21844	CpG island 21844	1690 bp distal
Pml	promyelocytic leukemia	within coordinates
Rr679900	regulatory region 679900	1894 bp distal
Rr679901	regulatory region 679901	1826 bp distal
Rr679902	regulatory region 679902	658 bp proximal
Rr679903	regulatory region 679903	1053 bp proximal
Rr679904	regulatory region 679904	1998 bp proximal
Tssr89888	transcription start site region 89888	1924 bp upstream
Tssr89889	transcription start site region 89889	1600 bp upstream
Tssr89890	transcription start site region 89890	564 bp downstream
Tssr89891	transcription start site region 89891	596 bp downstream
Tssr89892	transcription start site region 89892	637 bp downstream