rs260537869 SNP Detail

Summary

• ID
  rs260537869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:65337340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTGCCTG CCTCTGCTGG
  GATTAAAGGC ACGTGCTACC CACCCATACC TGAGGTTCCC TCTTCTCAGA AGATCCTAGC
  TTGTGTCAAG TTGACAACAA CTAACCATCG AACCATCCTT CCTCCTTCCC TTTCTGGGGA
  CATGTAACGC TCCTCTCTCC CACTGATGAG CGCAGGAGGT AGAAATTGAC TAGACAAGGC
  Y
  GGGGCGCAGG GAGTGATCGG CCTTTTCTTG GCTAAAGGCT GGAAATAGGT CAAAGATGCC
  ACAAGTGCCT AAGCCAAGTG CCACCAGGCT GGAGAGGCCA GGAAGGAGGT CGTCGTCTCC
  TACCCCTTTC CTGGACGCCA TACTGAGGCT GTGACCCAAA CTGCAAGGAC CTCGACACCT
  GGCATGAAAG CTGAACTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391347602	MGP_WTSI_14_65718728	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260537869					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391347602	MGP_WTSI_14_65718728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:65337340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6626	CpG island 6626	1451 bp distal
Extl3	exostosin-like glycosyltransferase 3	within coordinates
Gm52119	predicted gene, 52119	within coordinates
Rr404153	regulatory region 404153	1584 bp downstream
Rr494017	regulatory region 494017	1797 bp distal
Rr494018	regulatory region 494018	1295 bp distal
Rr494019	regulatory region 494019	1743 bp distal
Rr494020	regulatory region 494020	787 bp distal
Rr494021	regulatory region 494021	721 bp proximal
Tssr126200	transcription start site region 126200	806 bp upstream
Tssr129239	transcription start site region 129239	1791 bp upstream