rs260539478 SNP Detail

Summary

• ID
  rs260539478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGAGTC TCAAGCCCAT
  CTCTCCCTGT ACCCCACCCT CAGGATGAAC ACGGATTCAT TGCTCGAGAG TTCCACCGCC
  GATACCGCCT GCCTCCTGGT GTGGACCCTG CTGCTGTGAC CTCAGCACTG TCTCCTGAGG
  GTGTCCTGTC CATCCAGGCC ACACCAGCGT CGGCCCAGGC CCAACTTCCG TCACCACCTG
  Y
  TGCCAAGTAG GGGTCCCAGC TGCACAGGAC CGAACCCAGG AAGCCTCTTT AGGCTCTCTT
  TTAAAAGCCG ATCTGACTCC ACTGCCCAGC CAGATGTCCC AATCGCCGTC AAGACAGCCT
  TTCCCAACCA CACCTAGATG TCCTTCGGAG ACCTTTCCAC CCCTAAGCCT ACCTGAGCCC
  TAGTAACCTA GACAGCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370910116	MGP_WTSI_7_31339645	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260539478					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370910116	MGP_WTSI_7_31339645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254051 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18808	CpG island 18808	1975 bp distal
Cpgi18809	CpG island 18809	1092 bp distal
Cpgi18810	CpG island 18810	29 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	815 bp downstream
Mir9769	microRNA 9769	1722 bp downstream
Tssr65780	transcription start site region 65780	1354 bp downstream
Tssr65781	transcription start site region 65781	1317 bp downstream
Tssr65782	transcription start site region 65782	146 bp upstream
Tssr65783	transcription start site region 65783	221 bp upstream
Tssr65784	transcription start site region 65784	245 bp upstream
Tssr65785	transcription start site region 65785	297 bp upstream
Tssr65786	transcription start site region 65786	315 bp upstream
Tssr65787	transcription start site region 65787	409 bp upstream
Tssr71789	transcription start site region 71789	39 bp downstream
Tssr71790	transcription start site region 71790	151 bp downstream