rs260541126 SNP Detail

Summary

• ID
  rs260541126
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6136819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGGAGCT ATTGTTGGCC
  TGAGCCTCGC GCAGAGCGCT GGACGAGCAG TACACAGGAG CGTAACTGCA CTTTGAATCC
  ATAGGGCCTG CTGTGTGCAA TCACTGTGGG CCACCCGGGT GCCATTGTCC AAAGTCAATC
  CAGTTTACAG TGTGGCCGCG TAGAACCCGG AAGTAGCCCG CAGTGAAATG TGTAGTGCTC
  S
  TGTGGTGAGA AACTGGAATG AGAATCCACA AAGGTCTGGC GTAGTTCTAC CATTAATTGC
  CTCTTCACTC TTTACATCTC CACTATCACA TTGACTGTTG ACTTAAACCT TCAGGCTCTA
  AAATCAAGAG ACTGAAAAAA ATATTAGGAA ATCAGAACTC ATTCATTAAC CACTTGTTGA
  TTGTGCCTTT TATGATGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399596448	MGP_WTSI_18_6136817	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260541126					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399596448	MGP_WTSI_18_6136817	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6136819 () rs orientation: forward

Symbol	Name	Function Class
Arhgap12	Rho GTPase activating protein 12	717 bp upstream
Cpgi9676	CpG island 9676	4 bp distal
Gm58680	predicted gene, 58680	within coordinates
Rr405549	regulatory region 405549	582 bp downstream
Rr533476	regulatory region 533476	942 bp distal
Rr533477	regulatory region 533477	593 bp distal
Rr533478	regulatory region 533478	within coordinates
Rr533479	regulatory region 533479	471 bp proximal
Tssr149959	transcription start site region 149959	392 bp downstream
Tssr152338	transcription start site region 152338	1589 bp upstream
Tssr152339	transcription start site region 152339	949 bp upstream
Tssr152340	transcription start site region 152340	820 bp upstream
Tssr152341	transcription start site region 152341	751 bp upstream