rs260542572 SNP Detail

Summary

• ID
  rs260542572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141933500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA TTAAAGGCAC GTGTCATTAC
  R
  CCCAGACCGC CTAACTTCTG GGCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471172	CHEV_7_149565668	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260542572					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141933500 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	1412 bp upstream
Rr658151	regulatory region 658151	1492 bp proximal
Tssr70137	transcription start site region 70137	1020 bp upstream
Tssr70138	transcription start site region 70138	1068 bp upstream
Tssr70139	transcription start site region 70139	1087 bp upstream
Tssr70140	transcription start site region 70140	1117 bp upstream
Tssr70141	transcription start site region 70141	1130 bp upstream
Tssr70142	transcription start site region 70142	1166 bp upstream
Tssr75774	transcription start site region 75774	1027 bp downstream
Tssr75775	transcription start site region 75775	1048 bp downstream
Tssr75776	transcription start site region 75776	1054 bp downstream
Tssr75777	transcription start site region 75777	1087 bp downstream
Tssr75778	transcription start site region 75778	1127 bp downstream
Tssr75779	transcription start site region 75779	1163 bp downstream
Tssr75780	transcription start site region 75780	1173 bp downstream
Tssr75781	transcription start site region 75781	1195 bp downstream
Tssr75782	transcription start site region 75782	1219 bp downstream