rs260544254 SNP Detail

Summary

• ID
  rs260544254
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121263177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCAGGT TTGGGGCTGG
  CACCGCGGTG GAAAGTTGAG ACCCGCAGCG GCGCTGAGGT TCCCCCCCCA ACCCCCCCGG
  TGCGGTGGCC TCCGGGCTTG AAAGTCTGAA AGTGGAGGAT CATTAAGAGA GCTGTGTAGA
  AAGGCCGGGC GGGGGAGACC CCGGGACCTC GCGACGACCT TGCCACCTCG ATGGCTGCTC
  W
  CTGCGCGCTG GGTCCGGCCG AGGGTCCCCG GCTGCCTGGC TCGCGCTGTA ACCTCGCGCT
  TCCCGGGTGG CGGGAAGGGG GTGTTTCTAG GGATCGGTCG CGTTGTGGGC GGGGACGCTG
  GGGCCCACAG TCCCTCTCCG CGCCGCCTGT GGGTGCCGAG GAATTTCAGG ACGCTCCCTG
  AGTCATCCCC GTGAAGTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376272889	MGP_WTSI_8_123060338	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260544254					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376272889	MGP_WTSI_8_123060338	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121263177 () rs orientation: forward

Symbol	Name	Function Class
1700016A09Rik	RIKEN cDNA 1700016A09 gene	454 bp downstream
Cpgi21150	CpG island 21150	within coordinates
Gse1	genetic suppressor element 1, coiled-coil protein	within coordinates
Rr174679	regulatory region 174679	1177 bp distal
Rr186097	regulatory region 186097	within coordinates
Rr401179	regulatory region 401179	772 bp upstream
Tssr79769	transcription start site region 79769	704 bp downstream
Tssr79770	transcription start site region 79770	571 bp downstream
Tssr79771	transcription start site region 79771	121 bp upstream
Tssr79772	transcription start site region 79772	925 bp upstream
Tssr79773	transcription start site region 79773	985 bp upstream
Tssr79774	transcription start site region 79774	1009 bp upstream
Tssr79775	transcription start site region 79775	1034 bp upstream
Tssr79776	transcription start site region 79776	1067 bp upstream
Tssr83196	transcription start site region 83196	826 bp downstream
Tssr83197	transcription start site region 83197	1134 bp downstream
Tssr83198	transcription start site region 83198	1204 bp downstream
Tssr83199	transcription start site region 83199	1226 bp downstream
Tssr83200	transcription start site region 83200	1328 bp downstream