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rs260546240 SNP Detail
Summary
  • ID
    rs260546240
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:84495410 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGGGCGAGGG CCAAGGAGGG
    ACGGAAAGTT GTGCTTGTGC GGCCGAGGAA GCGGCGGCGG GAGGCCGTGG CGCGGAGTGG
    GGGGCAGAGG AGAAGCGAGA GCGCAGCTCG GCGCCCCGGC CCGCCCCCCG CCCGAGCCGT
    CGGCAGCTCG CGGACTGGTG GAACTCGGAG ACCTGAGAGC GTGCGCCCTT TATACAGCCC
    M
    GGAGCGGCGC GGCGGCGGGG CAAAGCGCAC CGGGGGAGGG GACTGAACGC TGACCGGCCG
    GGGTCTCCAG GCAACGCCGC CCGCCAGCCC GCGGACGTCA GGCTCCTTCT CGGCTTCTCA
    TTGGTCGCCG CCAATTTTTC CCCTTCGGGG GAGGGGAGGA GAGGGGAGGG GAGGGGCGGG
    CAGCCTGGGC GTCCCGAGCG                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282288 MGP_WTSI_17_84587322 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260546240 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282288 MGP_WTSI_17_84587322 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84495410 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 730 bp distal
Cpgi9566 CpG island 9566 within coordinates
Gm36279 predicted gene, 36279 1898 bp upstream
Gm56881 predicted gene, 56881 165 bp upstream
Rr333589 regulatory region 333589 1391 bp proximal
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 within coordinates
Tssr146045 transcription start site region 146045 865 bp downstream
Tssr146046 transcription start site region 146046 622 bp upstream
Tssr149652 transcription start site region 149652 1961 bp upstream
Tssr149653 transcription start site region 149653 1909 bp upstream
Tssr149654 transcription start site region 149654 1785 bp upstream
Tssr149655 transcription start site region 149655 1641 bp upstream
Tssr149656 transcription start site region 149656 1600 bp upstream
Tssr149657 transcription start site region 149657 1370 bp upstream
Tssr149658 transcription start site region 149658 1327 bp upstream
Tssr149659 transcription start site region 149659 1291 bp upstream
Tssr149660 transcription start site region 149660 1265 bp upstream
Tssr149661 transcription start site region 149661 1202 bp upstream
Tssr149662 transcription start site region 149662 1162 bp upstream
Tssr149663 transcription start site region 149663 1093 bp upstream
Tssr149664 transcription start site region 149664 1050 bp upstream
Tssr149665 transcription start site region 149665 978 bp upstream
Tssr149666 transcription start site region 149666 916 bp upstream
Tssr149667 transcription start site region 149667 816 bp upstream
Tssr149668 transcription start site region 149668 792 bp upstream
Tssr149669 transcription start site region 149669 730 bp upstream
Tssr149670 transcription start site region 149670 225 bp upstream
Tssr149671 transcription start site region 149671 83 bp upstream
Tssr149672 transcription start site region 149672 28 bp upstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 35 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory