rs260546240 SNP Detail

Summary

• ID
  rs260546240
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84495410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCGAGGG CCAAGGAGGG
  ACGGAAAGTT GTGCTTGTGC GGCCGAGGAA GCGGCGGCGG GAGGCCGTGG CGCGGAGTGG
  GGGGCAGAGG AGAAGCGAGA GCGCAGCTCG GCGCCCCGGC CCGCCCCCCG CCCGAGCCGT
  CGGCAGCTCG CGGACTGGTG GAACTCGGAG ACCTGAGAGC GTGCGCCCTT TATACAGCCC
  M
  GGAGCGGCGC GGCGGCGGGG CAAAGCGCAC CGGGGGAGGG GACTGAACGC TGACCGGCCG
  GGGTCTCCAG GCAACGCCGC CCGCCAGCCC GCGGACGTCA GGCTCCTTCT CGGCTTCTCA
  TTGGTCGCCG CCAATTTTTC CCCTTCGGGG GAGGGGAGGA GAGGGGAGGG GAGGGGCGGG
  CAGCCTGGGC GTCCCGAGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399282288	MGP_WTSI_17_84587322	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260546240					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282288	MGP_WTSI_17_84587322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84495410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	730 bp distal
Cpgi9566	CpG island 9566	within coordinates
Gm36279	predicted gene, 36279	1898 bp upstream
Gm56881	predicted gene, 56881	165 bp upstream
Rr333589	regulatory region 333589	1391 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	within coordinates
Tssr146045	transcription start site region 146045	865 bp downstream
Tssr146046	transcription start site region 146046	622 bp upstream
Tssr149652	transcription start site region 149652	1961 bp upstream
Tssr149653	transcription start site region 149653	1909 bp upstream
Tssr149654	transcription start site region 149654	1785 bp upstream
Tssr149655	transcription start site region 149655	1641 bp upstream
Tssr149656	transcription start site region 149656	1600 bp upstream
Tssr149657	transcription start site region 149657	1370 bp upstream
Tssr149658	transcription start site region 149658	1327 bp upstream
Tssr149659	transcription start site region 149659	1291 bp upstream
Tssr149660	transcription start site region 149660	1265 bp upstream
Tssr149661	transcription start site region 149661	1202 bp upstream
Tssr149662	transcription start site region 149662	1162 bp upstream
Tssr149663	transcription start site region 149663	1093 bp upstream
Tssr149664	transcription start site region 149664	1050 bp upstream
Tssr149665	transcription start site region 149665	978 bp upstream
Tssr149666	transcription start site region 149666	916 bp upstream
Tssr149667	transcription start site region 149667	816 bp upstream
Tssr149668	transcription start site region 149668	792 bp upstream
Tssr149669	transcription start site region 149669	730 bp upstream
Tssr149670	transcription start site region 149670	225 bp upstream
Tssr149671	transcription start site region 149671	83 bp upstream
Tssr149672	transcription start site region 149672	28 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	35 bp upstream