rs260546319 SNP Detail

Summary

• ID
  rs260546319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108215348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTGTTG CTTTCGCCGG
  AAAGACTCCC CTGGAGAGGC TTCTTGAATG GCACCAGCTC CTCCTACTCC CTCCCTCTTC
  TAGACTAACC TTTTGTCTCC TCCCAAGAAC ATGGAAGTGG TTTCCCTGTG ACACGTTCAA
  ATCTAAAAAG TGGAGTGGAA GCCGGGTGTG GTGGCGCAGG CCTTTCATCC CAGCACTCGG
  K
  AGGCAGAGGC AGGTGGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAATG TGAGTTCCAG
  GACAGCCAGG GATATACAGA GAAACCCTGT CTAAAAAAGA CAAAAAAAAA AAAAAAAAAA
  AAAAGTGGAG TGGAATGTCA TAGAGGGGAC ATGAGGGGCT GGGTTTTCTG GACTAAGACC
  AAACTGCACT GGGGGCAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864934	MGP_WTSI_9_108240480	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260546319					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864934	MGP_WTSI_9_108240480	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108215348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	945 bp proximal
Gm37401	predicted gene, 37401	within coordinates
Gm57050	predicted gene, 57050	663 bp downstream
Gpx1	glutathione peroxidase 1	931 bp upstream
Rhoa	ras homolog family member A	206 bp downstream
Rr383883	regulatory region 383883	122 bp upstream
Rr686784	regulatory region 686784	within coordinates
Rr686785	regulatory region 686785	114 bp proximal
Rr686786	regulatory region 686786	1975 bp proximal
Tssr3010	transcription start site region 3010	1593 bp upstream
Tssr87086	transcription start site region 87086	1318 bp downstream
Tssr87087	transcription start site region 87087	850 bp downstream
Tssr87088	transcription start site region 87088	668 bp downstream
Tssr87089	transcription start site region 87089	608 bp downstream
Tssr87090	transcription start site region 87090	899 bp upstream
Tssr87091	transcription start site region 87091	924 bp upstream
Tssr87092	transcription start site region 87092	1072 bp upstream
Tssr87093	transcription start site region 87093	1094 bp upstream
Tssr87094	transcription start site region 87094	1118 bp upstream
Tssr87095	transcription start site region 87095	1139 bp upstream
Tssr87096	transcription start site region 87096	1159 bp upstream
Tssr87097	transcription start site region 87097	1627 bp upstream
Tssr87098	transcription start site region 87098	1779 bp upstream
Tssr91519	transcription start site region 91519	1727 bp downstream
Tssr91520	transcription start site region 91520	1772 bp downstream
Tssr91521	transcription start site region 91521	1919 bp downstream
Tssr91522	transcription start site region 91522	1977 bp downstream