rs260546443 SNP Detail

Summary

• ID
  rs260546443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49737394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGAGGCCT GACAATGGCT
  CCTACACTGT AGTCGCAAAG TCACGCCTCG CCCCTCCCCG GCTCTGGCTC CCCTTGGCCC
  ACCCTCTCCG GCGCATGCGG GTCTCCTGGC CCTGGAGGGC GGGCTCAGGA GACGGTCCTA
  GCTTGACCTG GATCCCTAAC TCTGTGCACA CTGGCGGACG CTCTTCCAGC AAGCAGACGG
  Y
  CAGACGGCGA GCCGCCTAGG GGGCGCCACT CTGCACTAGG GCATCCAGAG CGCGCCACTG
  GCCCCGCCCA CACCCAGCCT CCAGCCACGC CCGTACTGCC CAGCCTTGCC CACCCCCAGT
  CTCAATTGGT CCCGCCTGTC TGGATATCCT AGTTCTGATT GGCTGGCCTA AGAATCCGTC
  AGACTGAGCG CCGCGGCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383316514	MGP_WTSI_11_49660069	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260546443					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383316514	MGP_WTSI_11_49660069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49737394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2801	CpG island 2801	within coordinates
Gm74054	predicted gene, 74054	173 bp upstream
Mapk9	mitogen-activated protein kinase 9	184 bp upstream
Rr446291	regulatory region 446291	1108 bp distal
Rr446292	regulatory region 446292	1550 bp distal
Rr446293	regulatory region 446293	1397 bp distal
Rr446294	regulatory region 446294	184 bp distal
Rr446295	regulatory region 446295	within coordinates
Rr446296	regulatory region 446296	19 bp distal
Rr446297	regulatory region 446297	197 bp proximal
Rr446298	regulatory region 446298	1531 bp proximal
Tssr3485	transcription start site region 3485	371 bp upstream
Tssr101198	transcription start site region 101198	165 bp upstream
Tssr101199	transcription start site region 101199	197 bp upstream
Tssr101200	transcription start site region 101200	238 bp upstream
Tssr101201	transcription start site region 101201	317 bp upstream