rs260552795 SNP Detail

Summary

• ID
  rs260552795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTT GCTCAGGATG CACAAAGGCC
  Y
  TGAGTTCAAT CCCCAAAGGG GACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321651939	CHEV_5_114580169	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260552795					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268221 () rs orientation: forward

Symbol	Name	Function Class
Alkbh2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	1942 bp upstream
Cpgi16309	CpG island 16309	1762 bp distal
Cpgi16310	CpG island 16310	32 bp proximal
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1413 bp downstream
Tssr48056	transcription start site region 48056	204 bp upstream
Tssr48057	transcription start site region 48057	228 bp upstream
Tssr48058	transcription start site region 48058	997 bp upstream
Tssr48059	transcription start site region 48059	1024 bp upstream
Tssr52694	transcription start site region 52694	1941 bp upstream
Tssr52695	transcription start site region 52695	545 bp downstream
Tssr52696	transcription start site region 52696	1426 bp downstream
Ung	uracil DNA glycosylase	226 bp upstream