rs260554982 SNP Detail

Summary

• ID
  rs260554982
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41494154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTCCTTG GTTTGGTACT CTAAAAATGT
  TATACATGAT GGACTTTAAA GTAAAGAACG ATAGATATGG ATTTTCTAAA TATTATGGAG
  TGAAAGAAAT AGCTGGGTGA ATTTGGTATT GTTGCATTCT TTGTGGGGGG TCAATCAATG
  S
  TCATGGCTCT CTTTTAGAAA TTAGAAAGAT GGCTATCAAG GATGTTAATT CTACCTGACA
  AAGTTATTGG TAATATCAAA CCCCATTTCA AAATAATCCC CTCTCGAGGC GATTGTGAGC
  ATTTCCTACT TTGTAGTTTT CTGAGATTGT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322927330	CHEV_9_41390941	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260554982					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41494154 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	6 bp downstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	856 bp downstream
Rr677062	regulatory region 677062	1507 bp distal
Rr677063	regulatory region 677063	1393 bp distal
Rr677064	regulatory region 677064	1245 bp distal
Rr677065	regulatory region 677065	846 bp distal
Rr677066	regulatory region 677066	719 bp distal
Rr677067	regulatory region 677067	138 bp distal
Rr677068	regulatory region 677068	9 bp proximal
Rr677069	regulatory region 677069	1930 bp proximal
Tssr84520	transcription start site region 84520	1936 bp downstream
Tssr84521	transcription start site region 84521	1891 bp downstream
Tssr84522	transcription start site region 84522	1854 bp downstream
Tssr84523	transcription start site region 84523	1758 bp downstream
Tssr84524	transcription start site region 84524	1598 bp downstream
Tssr84525	transcription start site region 84525	1542 bp downstream
Tssr84526	transcription start site region 84526	1507 bp downstream
Tssr84527	transcription start site region 84527	854 bp downstream
Tssr84528	transcription start site region 84528	166 bp upstream
Tssr84529	transcription start site region 84529	1553 bp upstream