rs260557062 SNP Detail

Summary

• ID
  rs260557062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139337490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGACCCA GACATCCACA
  GTAGCGACAG GGAGCTGTCG CAGCCCAGGC TCACGCTGTT GCAGGGAAGA GAGGTGCTAG
  GGTGAATGCA GTCTAGGCTG GGCTTCTCTC CACAGACAAG ACCTGGCTGT AAGGACTGCG
  GATGGCTTCT GCGCCTTCCT CAGCTCAGCA TTTGTGCAGG GCGTGGATAA CACCCCAGGG
  R
  ATAGGCCCCG TGGTGAGGGG CCCTGCTTGG GGGGTAGGAC TCCAGGTGCC TCATGTTGAG
  GCAGGCTGCG GGGAAGCAAC CCAGCTACTT CTGGTGCCAA GAGCCACCCG CCCGCAGAGC
  CCTTTCTCAC AGAGGCACCT CCTCCCCAGT GAGGCCTCCA GGGTTTAAGA GACAGGATTA
  GAGCCCAGAC AGCTAGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704296	CHEV_5_139827689	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260557062					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139337490 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	882 bp upstream
Tssr49499	transcription start site region 49499	872 bp upstream