rs260559617 SNP Detail

Summary

• ID
  rs260559617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85616807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tacacagag aaaccctgtc ttaaaaacaa
  aTCAATAACA AAAGAATCTG TAAAACCGTT CCCTATGCTA CTGCGCAGTG CTGGAGATGC
  TGCTTGTCTC CCTGTCCATG TCTTGGTCCC CACCCCTCAC ACCTTTGGCA CCTGAGGGAG
  Y
  GACACAAATG GACAGAGTGG AGGGCTCATA GCTACAACCA CCGTGATGAC TTGCTGGGAG
  TGGATTTTAG AATAAATTCA AGAATGTTTC CCCCTATCCA TTAGTCCATT GGAATCTCTG
  ATTAGAATTG CATTCATCTT ATTAATTAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319826441	CHEV_1_87585661	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260559617					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85616807 () rs orientation: forward

Symbol	Name	Function Class
Rr34934	regulatory region 34934	807 bp distal
Rr366934	regulatory region 366934	1429 bp downstream
Sp100	nuclear antigen Sp100	within coordinates
Tssr7686	transcription start site region 7686	841 bp downstream