rs260560245 SNP Detail

Summary

• ID
  rs260560245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121980719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTTCC ATGTCCCTAT
  AGCGTGCAGT AGCTATTCCC AACATGTTGA GCGACTTCAG CTATCTGAAA GCCCCATATC
  CCCTTGCACA CACTGCTTAC TTCCAGCAGA GTGCATTCTC AATTGTCATG GTCCTCACAT
  CTCCCTCTGG TCCTTTACCC ATCCCAACTC AGTTGCTTAA AGCTTTCCTA GCTTCTGTGG
  Y
  ATTTTAAATT TTGTTTGTTT TCTAGTTCAT GAAACCAGAG GTTTGGTTTC AGAATGCAAA
  CTCTGGGCTG GAACAGAGAA ACCCTGGGTT GACTCGCATA GGAACCTCAT TAGGGAGGAG
  CCAATGCTAA CACCTGCCAC CTGAGGGGTA ATTGCTCAGC TCTCAGCACT GGATCAGACA
  TATGTGTTGG GAAGTCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480712	MGP_WTSI_2_121975974	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260560245					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480712	MGP_WTSI_2_121975974	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121980719 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Cpgi12169	CpG island 12169	1994 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19807	transcription start site region 19807	1054 bp downstream
Tssr19808	transcription start site region 19808	980 bp downstream
Tssr19809	transcription start site region 19809	664 bp downstream
Tssr19810	transcription start site region 19810	324 bp upstream
Tssr19811	transcription start site region 19811	637 bp upstream
Tssr19812	transcription start site region 19812	672 bp upstream
Tssr19813	transcription start site region 19813	696 bp upstream
Tssr19814	transcription start site region 19814	719 bp upstream
Tssr19815	transcription start site region 19815	735 bp upstream
Tssr19816	transcription start site region 19816	751 bp upstream
Tssr19817	transcription start site region 19817	774 bp upstream
Tssr19818	transcription start site region 19818	797 bp upstream
Tssr19819	transcription start site region 19819	854 bp upstream
Tssr25955	transcription start site region 25955	672 bp downstream
Tssr25956	transcription start site region 25956	749 bp downstream
Tssr25957	transcription start site region 25957	867 bp downstream