rs260563798 SNP Detail

Summary

• ID
  rs260563798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:87949656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATGGTC CCCAAAGGAC
  CTACAGCAAC CCAAGAGGGC TGGGAGGAAT AAACACGCGA CACCTGACGG TCCTTTCTCT
  GTGCTGACTT TCCCTAAGCC CAAGTCGAAC ACTCACGCGC GCGCGCGCCC GCGCGCGGGC
  AGCAGAGACC TGGCCAGCAC GGCGCCGCGC CCCCGGGTCC CAGGCTAGCC CGGCAAGCGC
  R
  GCGCGGGGGG CGGGGAACGG CCCGGGGAGC GCCGGGGCCC CGCGATTGTT TCCTCCCGGA
  GCAAAGACAT TTTTTATCAA GTCTCTTTTG TATTCGAGCC CTACCTCTTT TTGGCCTAGG
  GAAGCTTTCG TGCAAGTGGA AGACGACTTT CTCCACAAAG TGCTGAATGT TACTGTGCTC
  CGGGCCGCGC ACGAACACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362318122	MGP_WTSI_4_87677323	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260563798					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362318122	MGP_WTSI_4_87677323	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87949656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14428	CpG island 14428	within coordinates
Mllt3	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	within coordinates
Rr101188	regulatory region 101188	within coordinates
Tssr42371	transcription start site region 42371	281 bp downstream
Tssr42372	transcription start site region 42372	1316 bp downstream
Tssr42373	transcription start site region 42373	1350 bp downstream
Tssr42374	transcription start site region 42374	1386 bp downstream
Tssr42375	transcription start site region 42375	1420 bp downstream
Tssr42376	transcription start site region 42376	1858 bp downstream
Tssr42377	transcription start site region 42377	1870 bp downstream
Tssr42378	transcription start site region 42378	1909 bp downstream