rs260570505 SNP Detail

Summary

• ID
  rs260570505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152916868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGTGTGGG TGTGCAGAGA ACTCCATGCG
  GTCGGACAAA CATTTCCCAC TCTCCTCAGC CTCCCCATCC TGTTACTTGG TCCGTGGCAA
  ATGAATGATC TGAAAACTAC TGGTCCCAGC AAGGTCCAAA GTTATTTGAA GTTTCAAAGC
  R
  TCATTGGACC AAAAACAGCA CAAAGTGCTG CAGTAAGGAA GCTGTTGCTG GGAGAAGAAG
  GGATGCATGC CAACATGGCC CATGGGCTTG TTGGCTCAGT AGTGCTAAGT CAACACATTC
  CATAATGTGT CATGTTAACT GAAAGAAGTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320070050	CHEV_1_154888247	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260570505					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152916868 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			1693 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			307 bp distal
Rr420582	regulatory region 420582			744 bp distal
Rr420583	regulatory region 420583			565 bp distal