rs260570671 SNP Detail

Summary

• ID
  rs260570671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132796278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTGCTA TTAATAAGGC
  CAAATGGATT ATTGTTTGTG CTTATTTAAA ACCATGTGCT GTTGAAACAA AAGCTAGAAA
  ACATAAGAGG TTTAAAACAA AACTCCTTAA GTCCATAACC ACAAAGCTTT TAGTTTTGTT
  TGAAATGGGG AAATACATAG TATTCTTTCC ACTCCCCCGG CCCCGGACCT CACTGCATCC
  Y
  ATTTTCCCTT CCTTGAGAGC CCACCCCTTC ATGGCCCCTT ACTAGTTTAA AGGTGTTTTT
  CATTAGTACT ATAGAACAAC GTTCAAACCT CAATCTCCTT TTTGAAGTTA GGCCTCTTTA
  AAATGATTGA GTCACAATTT CAGCAGCGTC AATGGCAGTG TATGCTCCTC AAAGTGCAGT
  TTAACACTCA TATAGCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359780776	MGP_WTSI_3_132753481	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260570671					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359780776	MGP_WTSI_3_132753481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132796278 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13847	CpG island 13847			663 bp proximal
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Ints12	integrator complex subunit 12			1338 bp upstream
Rr398028	regulatory region 398028			378 bp upstream
Rr398029	regulatory region 398029			1240 bp upstream
Rr585500	regulatory region 585500			within coordinates
Rr585501	regulatory region 585501			1298 bp proximal
Rr585502	regulatory region 585502			1334 bp proximal
Rr585503	regulatory region 585503			1506 bp proximal
Tssr31768	transcription start site region 31768			1310 bp upstream
Tssr31769	transcription start site region 31769			1327 bp upstream
Tssr31770	transcription start site region 31770			1369 bp upstream
Tssr31771	transcription start site region 31771			1406 bp upstream
Tssr35744	transcription start site region 35744			1219 bp downstream
Tssr35745	transcription start site region 35745			1247 bp downstream
Tssr35746	transcription start site region 35746			1281 bp downstream
Tssr35747	transcription start site region 35747			1512 bp downstream
Tssr35748	transcription start site region 35748			1528 bp downstream
Tssr35749	transcription start site region 35749			1861 bp downstream