rs260577245 SNP Detail

Summary

• ID
  rs260577245
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58574048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAGAAA ATGCCCGTGG
  CTATTCTGGC CTCCCCTGTT TGCTCTTCCT CAATCCATAG TGGTAATTTT CAACTTCCAT
  TGAAATTCAC CAATAGTTTC TTTTTTTTTT TTTTTTTAAA GATTTATTTA TTTATTTATT
  ATATGTAAGT ACATTGTAGC TGTCTTCAGA CACTTCAGAA GAGGGGATCA GATCTTGTTA
  M
  GGATGGTTGT GAGCCACCAT GTGGTTGCTG GGATTTGAAC TCTGGACCTT CGGAAGAGCA
  GTCGGGTGCT CTAACCCACT GAGCCATCTC ACCAGCCCCA ATAGTTTCTT TTTAAAAACA
  GAAGTCAGAC AACGGCTCTA AAACTTCCTC GTGGTGTCGC TCGCCTTTAA TCCCAGCACT
  TGGGAGGCAA AGGCAGGCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	KK/HlJ	NZO/HlLtJ	NZW/LacJ
ss377713710	MGP_WTSI_9_58514572	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	KK/HlJ	NZO/HlLtJ	NZW/LacJ
rs260577245					SNP	C	C	C	C	C	C	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377713710	MGP_WTSI_9_58514572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58574048 () rs orientation: forward

Symbol	Name	Function Class
A130026P03Rik	RIKEN cDNA A130026P03 gene	within coordinates
Rec114	REC114 meiotic recombination protein	within coordinates