rs260579461 SNP Detail

Summary

• ID
  rs260579461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9814365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGCTA GCCAGCTAGC
  CGGCTAGCCA GCTCCTAGCC CAGCCAGAAG CTGCCCCTAA CAAACACAGA GCCTACTTCA
  CCTTGTTCAG AGAACCAACT GTAAGAAACT TCTTGGACTC CTATACTGAG TAGTAGCTTT
  TGTTATTGCA GGTCTGCCAA ACTCAGGAGT CACCCTCCTC CTTTAATGAC TGATAATCTG
  R
  AAAAGCAGGC GAGCAACAGC AGTAAAAATA AATAAATAAA TAAATAAATA AATAAATAAA
  TAAATGCCAT TTCTCAGGGT TATTTTGCAA TAAAAAGACA ATGGTCAAAG ATTTAACAAA
  ACCTGACACG TAGTAGGTAC CCAAGAAAAA ATGAGAGCCC TCTAAAGTAA CTCATCCAGG
  GGGGATCGAT ATGGCTACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395370696	MGP_WTSI_16_9996594	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260579461					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395370696	MGP_WTSI_16_9996594	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9814365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7945	CpG island 7945	474 bp distal
Gm30668	predicted gene, 30668	708 bp downstream
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	941 bp upstream
Rr511424	regulatory region 511424	1930 bp distal
Rr511425	regulatory region 511425	1088 bp distal
Rr511426	regulatory region 511426	980 bp distal
Rr511427	regulatory region 511427	1617 bp proximal
Tssr139893	transcription start site region 139893	1934 bp upstream
Tssr139894	transcription start site region 139894	1489 bp upstream
Tssr139895	transcription start site region 139895	1413 bp upstream
Tssr139896	transcription start site region 139896	1197 bp upstream
Tssr139897	transcription start site region 139897	1158 bp upstream
Tssr139898	transcription start site region 139898	1129 bp upstream
Tssr139899	transcription start site region 139899	1101 bp upstream
Tssr139900	transcription start site region 139900	1058 bp upstream
Tssr139901	transcription start site region 139901	982 bp upstream
Tssr139902	transcription start site region 139902	952 bp upstream
Tssr139903	transcription start site region 139903	920 bp upstream
Tssr139904	transcription start site region 139904	832 bp upstream
Tssr139905	transcription start site region 139905	776 bp upstream
Tssr139906	transcription start site region 139906	683 bp upstream