rs260580546 SNP Detail

Summary

• ID
  rs260580546
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63327373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATGACA GCCCCAACCC
  ACCACAGCTA CCTCACTCCT ACAGTGAGAC TCGTGGTACA GTGACCTGAA GTCAGTGCAC
  TAGCCATTGT CACCAATGTC TATGACTGTT GATCTGTTCT TTCTCTGACT TCATCTCTAA
  ACTTAGTTGG GGATGCTGAA CAAAAGCTTT CTAAGATGTC ACCCAACTGG ACTTGAAGAT
  R
  ATACCAGAGG GAATACTACC CTGACCATTT TTTAGAGGGG TAAACTGAGG TGCTCAGAAG
  TAAAGCCTGC CAGCGACCTC CTGTTGCATC TCGAGATCTG CCCATGGAGG AGGCGACATG
  GGACTCTGAT ATACACAAGG TCTGTGGATT CTCTGAAATG CAGCTCTGCC CACAGGGGAC
  AAAACACAGT GCAGTTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361735977	MGP_WTSI_4_63070170	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260580546					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361735977	MGP_WTSI_4_63070170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63327373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	737 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	980 bp upstream
Rr398308	regulatory region 398308	1501 bp upstream
Rr593544	regulatory region 593544	70 bp proximal
Rr593545	regulatory region 593545	1524 bp proximal
Tssr37559	transcription start site region 37559	469 bp upstream
Tssr42046	transcription start site region 42046	857 bp downstream
Tssr42047	transcription start site region 42047	874 bp downstream
Tssr42048	transcription start site region 42048	1052 bp downstream
Tssr42049	transcription start site region 42049	1078 bp downstream
Tssr42050	transcription start site region 42050	1547 bp downstream
Tssr42051	transcription start site region 42051	1569 bp downstream
Tssr42052	transcription start site region 42052	1609 bp downstream