rs260583003 SNP Detail

Summary

• ID
  rs260583003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106107031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTATTGA TGCATGTCAC
  CACCGGCCGG ACTTAAAGGG TTGGTTAGGA GGGAAACAGT ACCTGGCTCT GCGGCCATGC
  AACTTAGTCA CCGCTCGGCC TGGCACGGTC ACACCGACTG GAATGTCATG GCCCCGCTAC
  CTACCTGCAC CCGAGGCTGC AACCGGGCCC GGGGCTCCTG AGGCCACTAC CTCCAACCAG
  Y
  CTGCCTTTGT CTGGTTTCTG TCTTCAGGTC GCAAAGATAA TCTGCGGGCC GCGATGTCAC
  TGAACAGCCC AGAACAGGTA GCTCAGTCAC GGCACCCTAC TCTTCACGTA GCTTCAGCCG
  TCCGTTACGT AGAATGCGTA CAGCTAGTTT GCGCCTGCGC GCGGGGTGGG GGCGGGGCGC
  GGCCTTCAGG ACATCCGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384584108	MGP_WTSI_11_106077519	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260583003					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384584108	MGP_WTSI_11_106077519	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106107031 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	within coordinates
Cpgi4018	CpG island 4018	within coordinates
Ddx42	DEAD box helicase 42	721 bp upstream
Gm74325	predicted gene, 74325	248 bp upstream
Rr245973	regulatory region 245973	within coordinates
Rr369397	regulatory region 369397	374 bp upstream
Rr403037	regulatory region 403037	60 bp upstream
Tssr105500	transcription start site region 105500	223 bp upstream
Tssr105501	transcription start site region 105501	313 bp upstream
Tssr105502	transcription start site region 105502	723 bp upstream
Tssr105503	transcription start site region 105503	766 bp upstream
Tssr105504	transcription start site region 105504	791 bp upstream
Tssr105505	transcription start site region 105505	846 bp upstream
Tssr111304	transcription start site region 111304	105 bp downstream
Tssr111305	transcription start site region 111305	113 bp downstream