rs260588433 SNP Detail

Summary

• ID
  rs260588433
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63328018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATACTT ATTTAACTCA
  ATACAACTAG TCTATTACCT CAACAAAACA GCCCCAGCGT CAACCCCTAA AACTCCCGAA
  GAGGAACCTG GGAGATTCTT CCGGCAGCCT GTGCGTATCT AGCTTTAACC TTCATGCTTC
  AGATTCAGCC TATTTCTTCT GTTTTAGAGG GCAGAAACAA TGCCTCTTTT CACTGGAGCC
  R
  GCTCAGCTTC TCATCTCGTC TCTAAAACAG CTCGCGTTTG TTTTCATCAA CTTTCCTTTC
  CAACTTTCTC AAACGCAGAA GTGCTTTTGA TTCTCTTCGT CCTGTCCTTT CAACTAAAGC
  CCGGGGAAGG AGCGTCAGAA GTCTCATCCA AGATTTCACA GCAAGCAAAC GCTGACACTG
  CCTCTCGCTT CGCGCCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361735986	MGP_WTSI_4_63070815	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260588433					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361735986	MGP_WTSI_4_63070815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63328018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	92 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	335 bp upstream
Rr398308	regulatory region 398308	856 bp upstream
Rr593544	regulatory region 593544	554 bp distal
Rr593545	regulatory region 593545	879 bp proximal
Tssr37559	transcription start site region 37559	154 bp downstream
Tssr42046	transcription start site region 42046	212 bp downstream
Tssr42047	transcription start site region 42047	229 bp downstream
Tssr42048	transcription start site region 42048	407 bp downstream
Tssr42049	transcription start site region 42049	433 bp downstream
Tssr42050	transcription start site region 42050	902 bp downstream
Tssr42051	transcription start site region 42051	924 bp downstream
Tssr42052	transcription start site region 42052	964 bp downstream