rs260589785 SNP Detail

Summary

• ID
  rs260589785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45572191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGGAACT CTGGCTCTAG
  TAATTGGAGA AAGGGCAAAG ACTTGAGGCC AGTGCGTCCG GAAGCTAAAG TTTGGAATCT
  TAAATGAGGA TGGATGGAGG AGGGGGACAG AAACAAGGGG AAGTCTAACT CTGACCCTGG
  AGAGAGTAGA GAGTGGGTCA CTGAGGACAA AATTGGGGGG CTGGGATGGA AGCTTGTACT
  Y
  CTCCATGATT GCAGGGACAG GAGGCTGCAT CCCAGGCCTG GGAGGAGTGT GGACCAGGAG
  CAAGGAAGCT CCACTGGCTG AGAAGCCAGC TGGGATGTTT TAATATTCCT TGAGAGTTGA
  AAAAGTTCGG TACTTGGGGT GCCTAGGGGA GGCGTTTAGG GAATCCCCAA CAATAGTGCC
  CAATAGAAGT GGAAGTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371187872	MGP_WTSI_7_53178137	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260589785					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371187872	MGP_WTSI_7_53178137	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45572191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	199 bp proximal
Cpgi19110	CpG island 19110	1199 bp proximal
Emp3	epithelial membrane protein 3	1363 bp upstream
Gm45442	predicted gene 45442	within coordinates
Odad1	outer dynein arm docking complex subunit 1	1305 bp upstream
Rr368318	regulatory region 368318	within coordinates
Rr368319	regulatory region 368319	209 bp upstream
Rr400324	regulatory region 400324	1125 bp downstream
Rr400325	regulatory region 400325	590 bp upstream
Rr646609	regulatory region 646609	896 bp distal
Rr646610	regulatory region 646610	within coordinates
Rr646611	regulatory region 646611	415 bp proximal
Rr646612	regulatory region 646612	1499 bp proximal
Rr646613	regulatory region 646613	1910 bp proximal
Tssr2257	transcription start site region 2257	73 bp downstream
Tssr2258	transcription start site region 2258	1342 bp downstream
Tssr66661	transcription start site region 66661	434 bp upstream
Tssr66662	transcription start site region 66662	767 bp upstream
Tssr66663	transcription start site region 66663	1435 bp upstream
Tssr72496	transcription start site region 72496	1987 bp upstream
Tssr72497	transcription start site region 72497	1884 bp upstream
Tssr72498	transcription start site region 72498	1640 bp upstream
Tssr72499	transcription start site region 72499	1455 bp upstream
Tssr72500	transcription start site region 72500	1320 bp upstream
Tssr72501	transcription start site region 72501	421 bp downstream
Tssr72502	transcription start site region 72502	652 bp downstream