rs260590050 SNP Detail

Summary

• ID
  rs260590050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105193185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACTTA CCAGAAGTCA
  TCTAGTGTCA ATAGCTCTTT AGCTAGGGGT AGGGCTTCAT GACCCACTTC CCTGTTCATG
  AAGAGTTTTT GACTTGATCT TGTTGAGGTC TTATGCATGC TACCACAGCT GCTATAAGTT
  AATATGTAGA ACTGTCCTAT TTTTTTCTAG AACACACTGT TGTTTTGAAT TAATCCACTG
  Y
  CTCTGGCCCT TACAATACTT CCATCCCCTC TTCCATGCTC TCTTGGAGAC AAGGGTATGT
  GATACAGATG TCCCATTTTG GATTAAACAC TCTGAGGTCT CTTACTCTTT GCTTAGTGAC
  CAGTGGTAGG TTTCTGTGTT TAACTGATAT CTACTGCAAA AAGAAATGAC TAACCAACCT
  ACCCTCCACA TTCATTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389805794	MGP_WTSI_13_105846757	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	C	T	T	C	C	C	T	C	C	T	C	C	C	T	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260590050					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	C	T	T	C	C	C	T	C	C	T	C	C	C	T	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389805794	MGP_WTSI_13_105846757	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105193185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6063	CpG island 6063	1637 bp distal
Rgs7bp	regulator of G-protein signalling 7 binding protein	1747 bp upstream
Rr485514	regulatory region 485514	1257 bp distal
Tssr123938	transcription start site region 123938	1885 bp upstream
Tssr123939	transcription start site region 123939	1856 bp upstream
Tssr123940	transcription start site region 123940	1830 bp upstream
Tssr123941	transcription start site region 123941	1813 bp upstream
Tssr123942	transcription start site region 123942	1771 bp upstream