rs260590907 SNP Detail

Summary

• ID
  rs260590907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52274441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTCCCC TCCCCTAGCC
  AAGGTATTTC AAGACCAAAT CTTTGTGTCC CAATAATTGA ATAGCTGAAA CTTTTTCCCA
  CTGCAAGATA TTCTTTCCTT ACTTATCTTG ACTCTTTATA TAGATATTTA TAGAAAGTAA
  AATTCCAACA AAAAAAAAAA GAGGCATATC TGTGTATGAT GTTCTTCCGA GTACTTGATT
  Y
  CTCTCAGGGA AACTTGCAAA CCACCTCTTA GCAGTTCATA TTGTTTTCTT TCTGAATCTC
  CTCTTTCTCA GGCCAGTTTT TTTTTCCAAG AGTTTGCACT TCCTCTTCTA AATTCCCCAC
  GTGAGGCCCA ACACCTCTGT GGAATAAACA TTTCCACAGC AACCCAGTGA TGTCACAAAC
  CTTCGGCTCA TGGTTGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364927597	MGP_WTSI_5_52508338	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260590907					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364927597	MGP_WTSI_5_52508338	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52274441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15852	CpG island 15852	448 bp distal
Gm40302	predicted gene, 40302	within coordinates
Gm43177	predicted gene 43177	within coordinates
Gm71495	predicted gene, 71495	1396 bp upstream
Rr611385	regulatory region 611385	1407 bp distal
Rr611386	regulatory region 611386	1222 bp distal
Rr611387	regulatory region 611387	280 bp distal
Rr611388	regulatory region 611388	852 bp distal
Tssr50981	transcription start site region 50981	1308 bp upstream
Tssr50982	transcription start site region 50982	1251 bp upstream
Tssr50983	transcription start site region 50983	1182 bp upstream
Tssr50984	transcription start site region 50984	1120 bp upstream