rs260591106 SNP Detail

Summary

• ID
  rs260591106
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGGGCA CCCCAGTTCA
  ACCTGCACAC TAGAAGCCAG GTGGGCCCCT GAGGGAGACA GCATAGAGCA AGAAGACAGC
  AGTCTCAGAG CAGGGAGCAG GACCGGCTGG ACACTGATCC AGATGAGTGA AGCCCAGGCA
  TACCCAGGGC AGGCATTCAT TGGTTTTACC TAGGTATCTC CTGGTCCCTC ACAGGGAACT
  K
  CGTCCTGTCA CAGAGGAGGA AAGCGGAAGT ATAAGGGGTA GTGCTTTTTA TTAGGGATGG
  AGAAACAGAA GTAGAACCTA GCACCTAGGC ACCTTAGTTT TTGCTGTTTG GGCCCCTGCT
  GAGCAGAGGA GAGCCAAGAT ATTCAGTTGA GAGGCCAGAT GCACAGACTG GAGGGGCGGT
  GGCCTGCTGT GTTCAGCGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246850	CHEV_4_106294477	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260591106					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	511 bp proximal
Rr596780	regulatory region 596780	70 bp proximal
Tssr38185	transcription start site region 38185	552 bp upstream
Tssr38186	transcription start site region 38186	614 bp upstream
Tssr38187	transcription start site region 38187	656 bp upstream
Ttc22	tetratricopeptide repeat domain 22	577 bp upstream