rs260592533 SNP Detail

Summary

• ID
  rs260592533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55908253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCATCAT AGATCCACTG
  AACAGGGAGG GACTATCATT CTTATGATCC ATTAAGTCTG AGCCTACCCA AAACACAGTG
  TTGTATATAT TAAAAACAAA GAATAAAATG GTGTTTAAAA CTCAAAGACC TGCTGGGCAG
  TGGTGGCGCA CGCCTTTAAT CCCAGCACTT GGGATGCAGA GGCAGGCGGA TTTCTGAGTC
  Y
  GAGGCCAGCC TGGTCTACAG AGTGAGTTTC TGGACATCCA GGGCTGCACT GAAAAACCCT
  GTCTCCAAAA ACAAAACAAA ACAAACAAAA AGAGTCAAAG ACCTATTGCT AATTCATAGA
  TTACCCATGT CTGAAAAACA GTAATCATCA ACTTGCCCTC TGACTTCAAT CTTTAATTAA
  AGTTTTTTTT GGAAGGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391161557	MGP_WTSI_14_56289633	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260592533					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391161557	MGP_WTSI_14_56289633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55908253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	840 bp proximal
Gmpr2	guanosine monophosphate reductase 2	1145 bp upstream
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	within coordinates
Rr492562	regulatory region 492562	323 bp proximal
Rr492563	regulatory region 492563	1238 bp proximal
Rr492564	regulatory region 492564	1318 bp proximal
Tssr125802	transcription start site region 125802	355 bp upstream
Tssr125803	transcription start site region 125803	1454 bp upstream
Tssr125804	transcription start site region 125804	1512 bp upstream
Tssr125805	transcription start site region 125805	1575 bp upstream
Tssr128855	transcription start site region 128855	1062 bp downstream
Tssr128856	transcription start site region 128856	1077 bp downstream
Tssr128857	transcription start site region 128857	1268 bp downstream
Tssr128858	transcription start site region 128858	1340 bp downstream
Tssr128859	transcription start site region 128859	1373 bp downstream
Tssr128860	transcription start site region 128860	1397 bp downstream