rs260595486 SNP Detail

Summary

• ID
  rs260595486
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127870959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCGTCTC AACAAAAGAC
  TGCACACGCA AAATTCACTG TGTTGAGGTT TTGCAGAGTA TTTTAAACTT TTGATCCTGT
  CACTGACTTC AAAGTGCTGG ATTAAGGGCT CGAACTATTT GCGATTTTAT ATGGTGCTGT
  GGATGGAACC CAGGACTTCT TGCATGCTGG GCAATCCCTC TACCAACCGA GCTACCTTCC
  M
  AGGCTCAAGT GTGGGTTTTT AATGTAGTCC TGCGACCCTA AAAACGGGTG AACTTTAAAA
  TATCTGAGAA GTGCTCAGAG TATCAGGCGA AGCGAATTGT GTTTATGCTC TGTGTTTGAG
  GTTTTTCCCT GGAGAGAACC GAGCTTTTGC TGTCCTAAAT CCTCTATTTC CAAAACTTAA
  ACCTAGGTCG CTTCTCTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382196989	MGP_WTSI_10_127472146	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260595486					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382196989	MGP_WTSI_10_127472146	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127870959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	178 bp proximal
Gm66417	predicted gene, 66417	within coordinates
Gm66418	predicted gene, 66418	1050 bp downstream
Naca	nascent polypeptide-associated complex alpha polypeptide	485 bp upstream
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96285	transcription start site region 96285	1820 bp downstream
Tssr96286	transcription start site region 96286	1738 bp downstream
Tssr96287	transcription start site region 96287	1482 bp downstream
Tssr96288	transcription start site region 96288	1415 bp downstream
Tssr96289	transcription start site region 96289	1396 bp downstream
Tssr96290	transcription start site region 96290	240 bp upstream
Tssr96291	transcription start site region 96291	249 bp upstream
Tssr96292	transcription start site region 96292	273 bp upstream
Tssr96293	transcription start site region 96293	390 bp upstream
Tssr96294	transcription start site region 96294	497 bp upstream
Tssr96295	transcription start site region 96295	514 bp upstream
Tssr96296	transcription start site region 96296	535 bp upstream
Tssr96297	transcription start site region 96297	547 bp upstream
Tssr96298	transcription start site region 96298	1128 bp upstream