rs260598442 SNP Detail

Summary

• ID
  rs260598442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122828940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAGACTCT CCCTGATCTG GCATCATTGG
  AGGACTTTCC AAAACTTTAG CACACCAACA ATAGCATATA AAAGCTGAGA ACTGCATATT
  TTCATTAATT AGTTGACAAA gtatgtgtgt gtgtgtgtgt gtgtgtatgt gtgtgcgtgC
  R
  cgcacacgcg tgcacatgtg tgcatggagg tcaaagggtg acttttggga cttagttttA
  GCATGCACTT ATTAGCTGGC CCTCAAGGAT TCCTTCATTC ATCTTTTGCA TGTATATATA
  CATTTTAAAA ACAAAATTTA GTGGGTTTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934557	CHEV_6_122801999	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260598442					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122828940 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	709 bp proximal
Tssr58711	transcription start site region 58711	1472 bp downstream
Tssr58712	transcription start site region 58712	1391 bp downstream
Tssr58713	transcription start site region 58713	1323 bp downstream
Tssr58714	transcription start site region 58714	954 bp upstream
Tssr62987	transcription start site region 62987	1928 bp upstream
Tssr62988	transcription start site region 62988	1862 bp upstream
Tssr62989	transcription start site region 62989	1702 bp upstream
Tssr62990	transcription start site region 62990	1649 bp upstream
Tssr62991	transcription start site region 62991	1620 bp upstream
Tssr62992	transcription start site region 62992	1570 bp upstream
Tssr62993	transcription start site region 62993	1477 bp upstream
Tssr62994	transcription start site region 62994	1300 bp upstream
Tssr62995	transcription start site region 62995	1246 bp upstream
Tssr62996	transcription start site region 62996	1109 bp upstream
Tssr62997	transcription start site region 62997	1043 bp upstream
Tssr62998	transcription start site region 62998	972 bp upstream
Tssr62999	transcription start site region 62999	919 bp upstream
Tssr63000	transcription start site region 63000	896 bp upstream
Tssr63001	transcription start site region 63001	880 bp upstream
Tssr63002	transcription start site region 63002	867 bp downstream