rs260604656 SNP Detail

Summary

• ID
  rs260604656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47259895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGAAGGC GCCGGCCAAT
  CAGCGCGCGG CGCTGGGAGT TGGCGCGCGC GGGAGGGCGG GCGGGAGGCG GGGCGGCGGC
  GTCTCTCGCG GGCTGCCCGG GCGGGGTCTC GGGGGGTCTG CGGTCCGCGG GAGGACCCGG
  GTCGCGGCGT CCGGCGGGTG GCTGGGTGGG TGCACGGGGT GGCGGGCGGG CGCGAGCCGG
  R
  GCCTCCGCGC TGAACGGTTG GACGCTAGGG GGCCTGCGAG CTTCCAGCCT CCCGATCCCG
  GGAGAAAAAT GACCGGCCGT CCTGGGCCGC GGAGCCGGGG AGCGTCTGGA GGTGACGAAG
  TTGAGGGATC CGCCGAAGTC TTTCTCGACT CGACTTCACG CGGCGATCAC CCCGCGGACG
  GGGTTGATTC GGAGCCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388517802	MGP_WTSI_13_47201787	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260604656					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388517802	MGP_WTSI_13_47201787	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47259895 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	218 bp upstream
Rr479039	regulatory region 479039	within coordinates
Rr479040	regulatory region 479040	18 bp proximal
Tssr119626	transcription start site region 119626	827 bp downstream
Tssr119627	transcription start site region 119627	8 bp downstream
Tssr119628	transcription start site region 119628	within coordinates
Tssr122369	transcription start site region 122369	1042 bp upstream
Tssr122370	transcription start site region 122370	895 bp upstream
Tssr122371	transcription start site region 122371	797 bp upstream
Tssr122372	transcription start site region 122372	717 bp upstream
Tssr122373	transcription start site region 122373	672 bp upstream
Tssr122374	transcription start site region 122374	544 bp upstream
Tssr122375	transcription start site region 122375	309 bp upstream
Tssr122376	transcription start site region 122376	291 bp upstream
Tssr122377	transcription start site region 122377	248 bp upstream
Tssr122378	transcription start site region 122378	213 bp upstream
Tssr122379	transcription start site region 122379	198 bp upstream
Tssr122380	transcription start site region 122380	186 bp upstream