rs260608100 SNP Detail

Summary

• ID
  rs260608100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190917275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGAGT CTCGCCCTTC
  ACAGGCCTCT GCCCTCCATC GAGGCCCCCG GAGTCTCTCG GTCCTTGCTG GCCCGGGAGG
  CCTAGGGTGG TTCCATCCCC GGGATCCTCT CAGATCCTGC CAGGATCTGA CGGGATTACA
  GCAGCATCGC GCGGGAAGCG CCAGGCTAAT GTTTTGCTTT GGGTTTTGCC TTGGAAACGG
  Y
  TCTCGGGGCC CCACCCTCCG TCTCCCACGC CCACACCCTG CTCCACACCT CCACAACCCG
  GCCTCCAGCC GACCTGCCGG CAGGTAAACC CCAGGCGTGT CGGCACAACC CCGAAGAAAG
  TCAGGTGCCT AGAAATGAAA GTCATTTGGG ATCTCCTCCT ACCTGCCCCA TCTTTTTACA
  GGCTGCCCTG GAATAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352827860	MGP_WTSI_1_193008957	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260608100					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352827860	MGP_WTSI_1_193008957	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190917275 () rs orientation: forward

Symbol	Name	Function Class
Atf3	activating transcription factor 3	1745 bp upstream
Cpgi1219	CpG island 1219	within coordinates
Rr396712	regulatory region 396712	1537 bp downstream
Tssr10734	transcription start site region 10734	1573 bp downstream
Tssr10735	transcription start site region 10735	1482 bp downstream
Tssr10736	transcription start site region 10736	1368 bp downstream
Tssr10737	transcription start site region 10737	801 bp upstream
Tssr10738	transcription start site region 10738	1610 bp upstream
Tssr15763	transcription start site region 15763	1818 bp upstream
Tssr15764	transcription start site region 15764	69 bp upstream
Tssr15765	transcription start site region 15765	1379 bp downstream