rs260610356 SNP Detail

Summary

• ID
  rs260610356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135872797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAGAGA CAGATGCTCC
  GTCCACGTGT CAAAAACTCT AAGTTTAAGG TGAGCACCCT GGCCTCTGGC TCCCTACTGC
  ACCACAGTCC CAGCTGTGAC TGGGCAGACC CTTGATTTCC CTAGCTCTTC ACAACTTTAC
  ATTTAAAATG AAGGTAGGAT ACCCCCCTCC TAGGCTCATT AGACGAGTCC AATGATAGCT
  Y
  CTAGGATAGC TTCTAGAATC CTCCATGAAG CGCTGGATGT AGAGTGTTTG CCAAGAATCC
  ACCTCTCCAC CCCAGGAAGA CTCTGGGGAT GTGGCTCGGC TGTAAATCCC TTGCATAGCA
  TGCAGGAGGC CCTGGTTTCT ATCCCTAGCA TGAGAAAAAC ATAAATAAAT GGTGAAGATT
  AGTCCCCAGC ACACGGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321697858	CHEV_5_136319813	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260610356					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135872797 () rs orientation: forward

Symbol	Name	Function Class
Rr622447	regulatory region 622447	235 bp distal
Srrm3	serine/arginine repetitive matrix 3	within coordinates
Srrm3os	serine/arginine repetitive matrix 3, opposite strand	within coordinates