rs260613825 SNP Detail

Summary

• ID
  rs260613825
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114395269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATCACAC ACACACACAC ACACACACAC ACACAGTGCA
  CACACATACA CACACACACA TACACACACA CACACATACA CACACACACA CACACACACA
  C
  ACACATACAC ACACATACAC ACACACACAT ACACAAACAT ACACACACAT TCACACACAC
  ACACACTCAC ACACACATAC ACACTCACAC ATACACACA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323201570	CHEV_9_114475319	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260613825					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114395269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22424	CpG island 22424	1616 bp distal
Rr383952	regulatory region 383952	968 bp downstream
Rr687644	regulatory region 687644	1342 bp distal
Trim71	tripartite motif-containing 71	1832 bp upstream
Tssr91848	transcription start site region 91848	1992 bp upstream
Tssr91849	transcription start site region 91849	1906 bp upstream
Tssr91850	transcription start site region 91850	1867 bp upstream
Tssr91851	transcription start site region 91851	1852 bp upstream