rs260616115 SNP Detail

Summary

• ID
  rs260616115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44507294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTCCTCT TCTCCCCGTT
  TCCCTCCCAA CCTCTCATCT CTCTTCTCTA CATCCCAGTC TCTCTCCCTA TGGCTGTGAT
  GGAAGTTGGT TCAAGCCCCC TTCCCCTTTA ACAGAAAGAA CTTTGTGTGC CAAATAACCA
  ACTAATCAGA GAAGGCAACA CCCTTGCTGC AGTTGTTAAA GAAAAATAAA GCTACTTTGC
  R
  GAGCAGGAGA AGGGACTGAG GATCTGAAGA TATTTAGAGT CGCAGGCTGC ATAGCCCCAG
  AGACTCATTC ACTCTTAGGG ACTTCTGGAG AGTAGTGACC GAGTGAAAAC CGCGCCCAAC
  AGCATTCGTG TCTGGGTTAG CACCAGAGTT AGAGGCATTT CAGAAGCCTG CTGAAGACTG
  AGTCTAGAAT GCCCATTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201261	MGP_WTSI_11_44429969	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260616115					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201261	MGP_WTSI_11_44429969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44507294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	241 bp proximal
Cpgi2763	CpG island 2763	1678 bp proximal
Ebf1	early B cell factor 1	mRNA-UTR
Gm37695	predicted gene, 37695	within coordinates
Rr369170	regulatory region 369170	545 bp upstream
Rr445653	regulatory region 445653	360 bp proximal
Rr445654	regulatory region 445654	861 bp proximal
Tssr101029	transcription start site region 101029	819 bp upstream
Tssr101030	transcription start site region 101030	843 bp upstream
Tssr101031	transcription start site region 101031	887 bp upstream
Tssr101032	transcription start site region 101032	908 bp upstream
Tssr101033	transcription start site region 101033	1020 bp upstream
Tssr101034	transcription start site region 101034	1047 bp upstream
Tssr101035	transcription start site region 101035	1084 bp upstream
Tssr101036	transcription start site region 101036	1146 bp upstream
Tssr101037	transcription start site region 101037	1180 bp upstream
Tssr101038	transcription start site region 101038	1222 bp upstream
Tssr101039	transcription start site region 101039	1400 bp upstream
Tssr101040	transcription start site region 101040	1461 bp upstream
Tssr101041	transcription start site region 101041	1657 bp upstream
Tssr101042	transcription start site region 101042	1718 bp upstream
Tssr101043	transcription start site region 101043	1741 bp upstream
Tssr107570	transcription start site region 107570	1598 bp downstream