rs260616339 SNP Detail

Summary

• ID
  rs260616339
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75118318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGTCCA TCGCACTGTC
  AGCCGCCACC CTGCGAAGGT GGAGGGAAAG GGAAGGAATC GTAAGTGACC CCAGAGCCGT
  GCTCACCCGT TGGCCCACCT CTCCCGAAAG GGCCACCGCC CGACTGCGCG CAGCCTCCTC
  CCTTCTCGCA GGCGGCCGTG GGACGCCTCT TCCTGTTCCG CGTGCGACTG GGCCTCCCGG
  M
  GCCCGACGAC AGGCGCGGCG CTCACCAGGC GAACCAGGAG GTACGAGGGC CAGCAGTGTT
  CTCAGCCCGT GCCGCGTTCG CTAGGCGTTT ATAAGCTGCG GGAGTGAGTG TCACCGACGA
  GTCTGCGCGC CCGGCAGGAA GTGCCTCCTG CCTTGCCCAA CCTGAGAGCT CCGGGTCTCC
  GGAGCTATGA GCACCGGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350135769	MGP_WTSI_1_75138248	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260616339					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350135769	MGP_WTSI_1_75138248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75118318 () rs orientation: forward

Symbol	Name	Function Class
Cnppd1	cyclin Pas1/PHO80 domain containing 1	within coordinates
Cpgi410	CpG island 410	within coordinates
Cpgi411	CpG island 411	561 bp proximal
Gm57175	predicted gene, 57175	within coordinates
Retreg2	reticulophagy regulator family member 2	1114 bp upstream
Rr29646	regulatory region 29646	within coordinates
Tssr7484	transcription start site region 7484	within coordinates
Tssr7485	transcription start site region 7485	113 bp upstream
Tssr7486	transcription start site region 7486	759 bp upstream
Tssr7487	transcription start site region 7487	828 bp upstream
Tssr7488	transcription start site region 7488	1044 bp upstream
Tssr7489	transcription start site region 7489	1088 bp upstream
Tssr7490	transcription start site region 7490	1101 bp upstream
Tssr7491	transcription start site region 7491	1139 bp upstream
Tssr7492	transcription start site region 7492	1154 bp upstream
Tssr7493	transcription start site region 7493	1569 bp upstream
Tssr12350	transcription start site region 12350	159 bp upstream
Tssr12351	transcription start site region 12351	144 bp upstream
Tssr12352	transcription start site region 12352	130 bp upstream
Tssr12353	transcription start site region 12353	68 bp upstream
Tssr12354	transcription start site region 12354	26 bp upstream
Tssr12355	transcription start site region 12355	55 bp downstream
Tssr12356	transcription start site region 12356	118 bp downstream
Tssr12357	transcription start site region 12357	650 bp downstream
Tssr12358	transcription start site region 12358	686 bp downstream
Tssr12359	transcription start site region 12359	960 bp downstream