rs260623962 SNP Detail

Summary

• ID
  rs260623962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49024015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTGTACTT ACATCAAGTG
  CTTTTAATTT CTTATAAAAA TAAGGCACAT TTGTGAATAC AGAACCTATT AAAACTCTTG
  CAGATACCTC ACCATGACAT TAAATGAGTC CTAAGGGAAG AGTATGCATT TCATGTGCAA
  ATCGTTTAAA CCGAATAGCC TTCATCTATA AATTAGGAAC TGGCTGGATT GCCCCTCTGT
  R
  GAGCTCTTTC ACTTTAAGCA GCTGTGAGCA GTTGTTACCT GTATGCAAGC AGAAAGTTGC
  TTCATCGGGT TTTGCATCAA GGCCGGCACC AGCTCCCTTT CAGGAGCGTC CAGCCTGTTC
  TCTTCGCAGA GCAACCTTTA ACCTTTCAGA AACAACTCTG CCTAAAGATC ATGTGATGTT
  ACCAGTAACT CAAAATGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368235212	MGP_WTSI_6_48997080	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	A	A	G	G	G	A	A	G	A	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260623962					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	A	A	G	G	G	A	A	G	A	G	G	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368235212	MGP_WTSI_6_48997080	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49024015 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	631 bp distal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	643 bp distal
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56319	transcription start site region 56319	1764 bp downstream
Tssr56320	transcription start site region 56320	1724 bp downstream
Tssr56321	transcription start site region 56321	1710 bp downstream
Tssr56322	transcription start site region 56322	1692 bp downstream
Tssr56323	transcription start site region 56323	1656 bp downstream
Tssr56324	transcription start site region 56324	1626 bp downstream
Tssr56325	transcription start site region 56325	1470 bp downstream
Tssr56326	transcription start site region 56326	1455 bp downstream
Tssr56327	transcription start site region 56327	1401 bp downstream
Tssr56328	transcription start site region 56328	1323 bp downstream
Tssr56329	transcription start site region 56329	1247 bp downstream
Tssr56330	transcription start site region 56330	1076 bp downstream
Tssr56331	transcription start site region 56331	1031 bp downstream
Tssr56332	transcription start site region 56332	958 bp downstream
Tssr56333	transcription start site region 56333	920 bp downstream
Tssr56334	transcription start site region 56334	910 bp downstream
Tssr56335	transcription start site region 56335	890 bp downstream
Tssr56336	transcription start site region 56336	863 bp downstream
Tssr56337	transcription start site region 56337	840 bp downstream
Tssr56338	transcription start site region 56338	824 bp downstream
Tssr56339	transcription start site region 56339	810 bp downstream
Tssr56340	transcription start site region 56340	620 bp downstream
Tssr56341	transcription start site region 56341	360 bp downstream
Tssr56342	transcription start site region 56342	328 bp downstream
Tssr56343	transcription start site region 56343	211 bp upstream
Tssr56344	transcription start site region 56344	225 bp upstream
Tssr56345	transcription start site region 56345	243 bp upstream
Tssr56346	transcription start site region 56346	280 bp upstream
Tssr56347	transcription start site region 56347	318 bp upstream
Tssr56348	transcription start site region 56348	344 bp upstream
Tssr56349	transcription start site region 56349	667 bp upstream
Tssr56350	transcription start site region 56350	694 bp upstream
Tssr56351	transcription start site region 56351	724 bp upstream
Tssr56352	transcription start site region 56352	737 bp upstream
Tssr56353	transcription start site region 56353	806 bp upstream
Tssr56354	transcription start site region 56354	821 bp upstream
Tssr56355	transcription start site region 56355	846 bp upstream
Tssr56356	transcription start site region 56356	864 bp upstream
Tssr56357	transcription start site region 56357	876 bp upstream
Tssr56358	transcription start site region 56358	894 bp upstream
Tssr56359	transcription start site region 56359	909 bp upstream
Tssr56360	transcription start site region 56360	946 bp upstream
Tssr60846	transcription start site region 60846	1689 bp upstream
Tssr60847	transcription start site region 60847	1606 bp upstream
Tssr60848	transcription start site region 60848	673 bp upstream
Tssr60849	transcription start site region 60849	248 bp downstream
Tssr60850	transcription start site region 60850	303 bp downstream
Tssr60851	transcription start site region 60851	773 bp downstream
Tssr60852	transcription start site region 60852	816 bp downstream
Tssr60853	transcription start site region 60853	826 bp downstream
Tssr60854	transcription start site region 60854	845 bp downstream
Tssr60855	transcription start site region 60855	878 bp downstream
Tssr60856	transcription start site region 60856	916 bp downstream
Tssr60857	transcription start site region 60857	945 bp downstream