rs260633025 SNP Detail

Summary

• ID
  rs260633025
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106862560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGTGAG TGAGCAATGC
  AAACAGGGAA AACTCACTCC CACTTGGCCA GGGTGCGGGG TGGGTATGGG AGGGGGCATG
  CGCCTAGGCC TTTGCGCTCA TTGGGCAGGT AGCCCCTAGA TAATGTTCGG ACAGCACCCA
  CTCACCCACG CCTGGCCAGT CAGCTGGGAC AGGCAGGCCT AAACCAGCCG GCCTCACCTA
  V
  AGGCGTCTGC CCCCGAGGCA GACACCGCCC GACGCCCTCG CTTCAGCGGT TCCCAGGAGA
  GCAGGCGGCA GAGACCAAGT GATCTACCGC TAAACCTGAG CCCACCTCGA CCCTATTTCT
  GACGTGTCCT CTGCTAGCGG GGGGAGTGGG AGGGAGAGGA AGGGGCCTCG GGGGGATGGA
  TCCCTTAGCC GCTATTGTCA                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375925156	MGP_WTSI_8_108659828	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260633025					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375925156	MGP_WTSI_8_108659828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106862560 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	within coordinates
Esrp2	epithelial splicing regulatory protein 2	within coordinates
Rr185913	regulatory region 185913	within coordinates
Tssr79219	transcription start site region 79219	497 bp downstream
Tssr79220	transcription start site region 79220	471 bp downstream
Tssr79221	transcription start site region 79221	448 bp downstream
Tssr79222	transcription start site region 79222	416 bp downstream
Tssr79223	transcription start site region 79223	358 bp downstream
Tssr79224	transcription start site region 79224	39 bp downstream
Tssr79225	transcription start site region 79225	14 bp upstream
Tssr79226	transcription start site region 79226	1130 bp upstream
Tssr82755	transcription start site region 82755	985 bp upstream
Tssr82756	transcription start site region 82756	968 bp upstream
Tssr82757	transcription start site region 82757	864 bp downstream
Tssr82758	transcription start site region 82758	962 bp downstream
Tssr82759	transcription start site region 82759	1440 bp downstream